Use xarray/netCDF4 throughout the pipeline (!30) · Merge requests · Chris Jewell / covid19uk · GitLab

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Chris Jewell requested to merge add_inferencedata_format into master Mar 04, 2021

CHANGES

Most tasks touched to use netCDF4 inferencedata file.
Added netCDF4 metadata copy to covid.util
Updated model_spec.py to use xarray
Updated covid.ruffus_pipeline to use netCDF4 files, adding pipeline metadata
Updated pyproject.toml
Removed chunk specification in inference.py. Defer to automatic chunking for now.