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  • Chris Jewell's avatar
    Pipeline bugfixes · 9fe819d7
    Chris Jewell authored
    CHANGES:
    
    1. Replaced `read_phe_cases` with `CasesData`
    2. Column-name fix in `case_exceedance`
    3. Fix column heading in `summarize.infec_incidence`
    4. Add Rt_exceed to `summarize.rt`
    5. Add layer option to `summary_geopackage`
    6. Update `ruffus_pipeline.py` to reflect above changes
    7. Update `template_config.yaml` to reflect above changes
    9fe819d7