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  • Chris Jewell's avatar
    Use xarray/netCDF4 throughout the pipeline · 023cbc5f
    Chris Jewell authored
    CHANGES
    
    1. Most tasks touched to use netCDF4 inferencedata file.
    2. Added netCDF4 metadata copy to covid.util
    3. Updated model_spec.py to use xarray
    4. Updated covid.ruffus_pipeline to use netCDF4 files, adding pipeline metadata
    5. Updated pyproject.toml
    6. Removed chunk specification in inference.py.  Defer to automatic chunking for now.
    023cbc5f