This is the repository for the main InFER (Inference for Epidemic Risk) package.

R package to read InFER HDF5-format MCMC output files

GPU implementation of a variogram, wrapped as an R package.

A Bayesian ZIP model which uses covariates on both the Poisson and Binomial parts.

sourceR R package to fit source attribution models

Scripts for reproducing the results in our paper on high-dimensional prediction over subgroups.

Notes from a seminar on RHDF5.

Experiments with ZigZag on SIR epidemic models.

An R package implementing a modified Reynolds 1986 flocking algorithm.

Language examples for epidemic modelling language

Inhibitory close pairs design.

Examples of epidemic likelihood functions

The DRUM agent-based model.