Discrete time Markov epidemic model for COVID-19. This paper describes the MCMC sampler we use to impute censored event times.

GEM epidemic modelling software base -- https://gem.readthedocs.io/en/latest/

sourceR R package to fit source attribution models

Sequential testing study for COVID-19

sourceR R package to fit source attribution models

Code for clustering of binary symptom data.

The DRUM agent-based model.

This is the repository for the main InFER (Inference for Epidemic Risk) package.

Pseudomarginal inference on SIR and SIS models, motivated by Rebecca Lester's community study...hence the package name.