Add-on classes for Tensorflow Probability provided by GEM. This is a transitional repo, intended to be incorporated into GEM eventually.

The DRUM agent-based model.

sourceR R package to fit source attribution models

sourceR R package to fit source attribution models

Making Uber H3 hexagons for polygon areas, with sample UK data.

Grabs ISO8601 date-named folders from an SFTP server.

Discrete time Markov epidemic model for COVID-19. This paper describes the MCMC sampler we use to impute censored event times.

GEM epidemic modelling software base -- https://gem.readthedocs.io/en/latest/

Sequential testing study for COVID-19

Code for clustering of binary symptom data.