- 24 Apr, 2020 1 commit
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Chris Jewell authored
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- 16 Apr, 2020 2 commits
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Chris Jewell authored
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Chris Jewell authored
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- 04 Apr, 2017 1 commit
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Chris Jewell authored
Replaced calls to uuid package with a queue-based labelling system in the Dirichlet Process. Here, we create as many labels as there are data point, then pull labels out of the "pot" as we need, and replace them after use. This allows us to remove the extra randomness in the DP process caused by the uuid generator (quite rightly) being independent of R's PRNG.
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- 07 Jan, 2017 1 commit
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Chris Jewell authored
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- 04 Jan, 2017 1 commit
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Poppy Miller authored
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- 20 Dec, 2016 1 commit
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Poppy Miller authored
Changed ddirich to calculate on log scale rather than logging after. Changed starting tuning values for r's. Fixed lambda_j_prop calculation (didn't work if lambda j not calculated first)
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- 14 Dec, 2016 1 commit
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Poppy Miller authored
Fixed problem with initial starting values for q being in the wrong order. Changed update lists to a single list to remove mcmc func closures. Added names to updaters so they can be identified for the acceptance rates. Added some more help file notes. NOT WORKING CORRECTLY for sim data.
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- 05 Dec, 2016 1 commit
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Poppy Miller authored
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- 03 Dec, 2016 1 commit
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Chris Jewell authored
Added AdaptiveSingleSiteMRW updater. Corrected a problem in AdaptiveLogDirMRW where individual components were not being able to adapt independently.
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- 02 Dec, 2016 1 commit
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Chris Jewell authored
Implemented AdaptiveLogDirMRW2 and DirichletNode2 which reparameterises the Dirichlet distribution as independent Gamma distributions.
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- 30 Nov, 2016 2 commits
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Chris Jewell authored
Fixed omission of concentration parameter from Dirichlet Process conditional posterior on groupings.
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Poppy Miller authored
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- 11 Nov, 2016 1 commit
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Poppy Miller authored
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- 07 Nov, 2016 1 commit
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Chris Jewell authored
Tidied up, and documented DAG and MCMC framework. model.R contains the SA model, built using the DAG. test.R contains test functions.
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- 13 Sep, 2016 1 commit
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Chris Jewell authored
Added AdaptiveLogDirMRW for updating Dirichlet process. Still not perfect, but better than simple MRW.
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- 01 Jul, 2016 1 commit
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Chris Jewell authored
Converted to R6 classes. Still having trouble sampling from the Dirichlet distribution with the R's.
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- 24 Jun, 2016 2 commits
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Chris Jewell authored
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Chris Jewell authored
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- 22 Jun, 2016 1 commit
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Chris Jewell authored
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