Pandoc latex

See merge request !3

# Conflicts:
#   .gitlab-ci.yml

This reverts commit 9dec47de

CHANGES:

1. Added `plot_rt_timeseries` to plotting functions
2. Added new page in PDF report to contain new plot
3. Added `xarray` and `netcdf4` packages
4. Updated .gitlab-ci.yml to copy in `reproduction_number.nc`

Update spim_report.pnw

See merge request !2

Automate

See merge request !1