Merge requests · Chris Jewell / covid19uk

Ruffus pipeline

!16 · created Jan 10, 2021 by Chris Jewell production
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updated Jan 10, 2021
0.5.0rc0

!17 · created Feb 03, 2021 by Chris Jewell
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updated Feb 03, 2021
Make data summaries weekly

!18 · created Feb 08, 2021 by Chris Jewell
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updated Feb 08, 2021
Added mean summary longformat

!19 · created Feb 08, 2021 by Chris Jewell
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updated Feb 08, 2021
Add missing 21 day incidence and prevalence summary.

!20 · created Feb 09, 2021 by Chris Jewell
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updated Feb 09, 2021
Created lower bound for posterior events chunk size

!21 · created Feb 15, 2021 by Chris Jewell
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updated Feb 15, 2021
Fixed incorrect events dimension

!22 · created Feb 15, 2021 by Chris Jewell
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updated Feb 15, 2021
Fix 1-day time shift in insample7 predictive distn

!23 · created Feb 17, 2021 by Chris Jewell
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updated Feb 18, 2021
Switched to NetCDF4 storage of predictive output

!25 · created Feb 24, 2021 by Chris Jewell
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updated Feb 24, 2021
Weekly 100k

!26 · created Feb 24, 2021 by Chris Jewell
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updated Feb 24, 2021
Added insample7 summary to summary_longformat.xlsx

!27 · created Mar 03, 2021 by Chris Jewell
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updated Mar 03, 2021
Added daily absolute incidence and incidence per 100k to summary_longformat.py

!28 · created Mar 04, 2021 by Chris Jewell
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updated Mar 04, 2021
Added cumulative incidence to `summary_longformat.xlsx`

!29 · created Mar 04, 2021 by Chris Jewell
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updated Mar 04, 2021
Use xarray/netCDF4 throughout the pipeline

!30 · created Mar 04, 2021 by Chris Jewell
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updated Mar 05, 2021
Fix geopackage geometry joining issue

!31 · created Mar 06, 2021 by Chris Jewell
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updated Mar 06, 2021
Adjusted pipeline to ensure config.yaml is written to results dir first.

!32 · created Mar 06, 2021 by Chris Jewell
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updated Mar 06, 2021
Modified Rt calculation

!33 · created Mar 17, 2021 by Chris Jewell
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updated Mar 17, 2021
Add option to push to AWS buckets

!34 · created Mar 24, 2021 by Chris Jewell
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updated Mar 24, 2021
Fix download retry

!35 · created Mar 24, 2021 by Chris Jewell
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updated Mar 24, 2021
Fix to trap ChunkedEncodingError in data download

!36 · created Mar 30, 2021 by Chris Jewell
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updated Mar 30, 2021