1. 12 Oct, 2020 1 commit
  2. 06 Oct, 2020 2 commits
  3. 05 Oct, 2020 1 commit
    • Chris Jewell's avatar
      Major new pipelining structure · bfcaf904
      Chris Jewell authored
      ==============================
      
      enqueue_pipeline.sh --> covid_pipeline.sge --> prepare_config.py --> inference.py --> summary.py
      
      enqueue_pipeline.sh identifies the dataset and analysis period, launching 4 SGE jobs [P1, P1+2]\times[specimen_date, report_date]
      
      Each SGE job runs the inference and summary scripts, using information contained in a config.yaml file.
      
      The config.yaml file, together with results outputs, are stored in a results directory specified the config file
      and over-ridden in the top-level enqueue_pipeline.sh script.
      bfcaf904
  4. 04 Oct, 2020 1 commit
  5. 03 Oct, 2020 6 commits
  6. 01 Oct, 2020 3 commits
  7. 27 Sep, 2020 5 commits
  8. 26 Sep, 2020 1 commit
  9. 25 Sep, 2020 3 commits
  10. 24 Sep, 2020 1 commit
  11. 23 Sep, 2020 2 commits
  12. 22 Sep, 2020 1 commit
  13. 21 Sep, 2020 2 commits
  14. 16 Sep, 2020 1 commit
  15. 14 Sep, 2020 4 commits
  16. 11 Sep, 2020 2 commits
  17. 05 Sep, 2020 1 commit
  18. 04 Sep, 2020 1 commit
    • Chris Jewell's avatar
      Pulled dates out of CovidUKStochastic class · 588d479e
      Chris Jewell authored
      Changes:
      
      1. Dates are pulled out of CovidUKStochastic
      2. CovidUKStochastic now behaves more like a tfd.Distribution
          * CovidUKStochastic is now instantiated with an initial time, number of time steps and
      time step size
          * CovidUKStochastic is now instantiated with the initial state.
      588d479e
  19. 30 Aug, 2020 2 commits