- 25 Sep, 2020 2 commits
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Chris Jewell authored
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Chris Jewell authored
Changes: 1. Created a TFP JointDistribution to represent full probability model; 2. Renamed CovidUKStochastic --> DiscreteTimeStateTransitionModel; 3. DiscreteTimeStateTransitionModel now inherits from tfp.Distribution.
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- 28 Jun, 2020 1 commit
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Chris Jewell authored
Re-wrote discrete_markov_log_prob to batch the call to tfd.Multinomial.log_prob to avoid lgamma time.
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- 25 Jun, 2020 1 commit
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Chris Jewell authored
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- 12 Jun, 2020 1 commit
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Chris Jewell authored
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- 01 Jun, 2020 1 commit
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Chris Jewell authored
Implemented custom nametuple for tracing innerd of UncalibratedEventTimesUpdate
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- 21 May, 2020 1 commit
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Christopher Suter authored
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- 18 May, 2020 2 commits
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Chris Jewell authored
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Chris Jewell authored
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- 28 Apr, 2020 1 commit
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Chris Jewell authored
First pass implementation of data augmentation MCMC. This is slow, buggy, and possibly not correct yet! Use with caution!
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- 17 Apr, 2020 1 commit
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Chris Jewell authored
Got stochastic model fitting with new bounded convergence respecting adaptive proposal. However, XLA appears now very slow.
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- 08 Apr, 2020 1 commit
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Chris Jewell authored
1. chainbinom* file and methods renamed to discrete_markov* files and methods. 2. Implemented batched hazard rate calculation, adding functions to automatically broadcast rates to the Markov transition rate matrix. 3. Implemented test simulation and MCMC algorithm.
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