1. 27 Sep, 2020 1 commit
  2. 06 Aug, 2020 1 commit
  3. 01 Aug, 2020 2 commits
  4. 22 Jul, 2020 2 commits
  5. 09 Jul, 2020 1 commit
  6. 08 Jul, 2020 2 commits
    • Chris Jewell's avatar
      Fix in discrete_markov simulation code · 0b337d47
      Chris Jewell authored
      Bug in discrete_markov.propagate found, introduced after changes for vectorised
      likelihood.
      0b337d47
    • Chris Jewell's avatar
      Added occult inference capability · cad36259
      Chris Jewell authored
      Changes:
      
      1. Added occult Metropolis Hastings update.
      2. Factored out Categorical2 distribution for use by both event time move and occults.
      3. Refactored mcmc.py script for HDF5 output purposes
      4. Apply compression to HDF5 output file.
      cad36259
  7. 04 Jul, 2020 1 commit
  8. 29 Jun, 2020 1 commit
  9. 24 Jun, 2020 1 commit
    • Chris Jewell's avatar
      Changes: · e72cfe76
      Chris Jewell authored
      1. Formatting -- black style!
      2. After profiling, implemented a better workaround for the
      tfd.Categorical bug.  Replaced with an inherited Categorical2 class,
      with overloaded log_prob function.
      3. Fixed a  bug in EventTimeProposal where tfd.FiniteDiscrete was
      being used on a non-strictly-increasing outcomes vector.
      4. Increased number of meta-populations to 149 to mirror UK UTLA regions.
      e72cfe76
  10. 12 Jun, 2020 1 commit
  11. 03 Jun, 2020 1 commit
  12. 01 Jun, 2020 1 commit
  13. 18 May, 2020 1 commit
  14. 12 May, 2020 1 commit
  15. 11 May, 2020 1 commit
  16. 20 Apr, 2020 1 commit
  17. 17 Apr, 2020 1 commit
  18. 09 Apr, 2020 1 commit
  19. 08 Apr, 2020 1 commit
    • Chris Jewell's avatar
      Major changes: · 94fe710d
      Chris Jewell authored
      1. chainbinom* file and methods renamed to discrete_markov* files and methods.
      
      2. Implemented batched hazard rate calculation, adding functions to automatically broadcast rates to the Markov transition rate matrix.
      
      3. Implemented test simulation and MCMC algorithm.
      94fe710d
  20. 05 Apr, 2020 1 commit
  21. 30 Mar, 2020 2 commits
  22. 28 Mar, 2020 1 commit
  23. 26 Mar, 2020 1 commit
  24. 25 Mar, 2020 1 commit
  25. 22 Mar, 2020 1 commit
  26. 20 Mar, 2020 2 commits
  27. 19 Mar, 2020 1 commit
  28. 16 Mar, 2020 1 commit
  29. 15 Mar, 2020 1 commit
  30. 12 Mar, 2020 1 commit
  31. 08 Mar, 2020 1 commit
  32. 03 Mar, 2020 1 commit