- 04 Jan, 2021 2 commits
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Chris Jewell authored
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Chris Jewell authored
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- 17 Dec, 2020 1 commit
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Chris Jewell authored
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- 09 Dec, 2020 4 commits
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Chris Jewell authored
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Chris Jewell authored
CHANGE: 1. Reverse experimental selection of last but one xi. 2. Updated template for most recent flow data
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Chris Jewell authored
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Chris Jewell authored
Note: in the actual analysis, the effect of December Tiers was removed.
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- 07 Dec, 2020 1 commit
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Chris Jewell authored
CHANGES: 1. New data adapter `read_challen_tier_restriction` 2. Modified `model_spec.py` to use new data adapter
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- 03 Dec, 2020 1 commit
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Chris Jewell authored
CHANGES: 1. Re-introduced Tier lockdown covariates. National lockdown covariate is set to 0 because we cannot identify this from the time-varying baseline force of infection. 2. Added inference on variance parameter for the temporal Gaussian process on beta.
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- 27 Nov, 2020 1 commit
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Chris Jewell authored
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- 24 Nov, 2020 1 commit
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Chris Jewell authored
CHANGES: 1. update date and data name in enqueue_pipeline.sh 2. update infection time initialisation in model_spec.py
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- 19 Nov, 2020 1 commit
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Chris Jewell authored
CHANGES: 1. Implemented log-linear model for weekday effect in I->R hazard; 2. Updated summary.py and within_between.py to match; 3. Implemented linear random walk for new gamma0 parameter. 4. Implemented per-parameter data structure in output HDF5 file.
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- 12 Nov, 2020 4 commits
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Chris Jewell authored
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Chris Jewell authored
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Chris Jewell authored
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Chris Jewell authored
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- 09 Nov, 2020 4 commits
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Chris Jewell authored
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Chris Jewell authored
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Chris Jewell authored
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Chris Jewell authored
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- 08 Nov, 2020 2 commits
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Chris Jewell authored
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Chris Jewell authored
CHANGES: 1. Re-implemented trace_fn 2. Implemented new Posterior class in `gemlib`
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- 03 Nov, 2020 1 commit
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Chris Jewell authored
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- 02 Nov, 2020 1 commit
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Chris Jewell authored
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- 01 Nov, 2020 1 commit
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Chris Jewell authored
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- 27 Oct, 2020 4 commits
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Chris Jewell authored
CHANGES: 1. Updated the model to use the new gemlib library; 2. Removed automatic deletion of results directory by prepare_config.py; 3. Parameterised `gamma` prior parameters and added to template_config.yaml; 4. Updated within_between.py to use global configuration file.
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Chris Jewell authored
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Chris Jewell authored
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Chris Jewell authored
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- 26 Oct, 2020 1 commit
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Chris Jewell authored
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- 22 Oct, 2020 10 commits
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Chris Jewell authored
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Chris Jewell authored
MCMC update kernels in `interface.py` changed to reflect new AdaptiveRandomWalkMetropolis interface.
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Chris Jewell authored
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Chris Jewell authored
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Chris Jewell authored
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Chris Jewell authored
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Chris Jewell authored
All project config now goes in `pyproject.toml`.
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Chris Jewell authored
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Chris Jewell authored
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Chris Jewell authored
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