1. 08 Mar, 2021 1 commit
    • Chris Jewell's avatar
      Adaptive Hamiltonian Monte Carlo within Gibbs implementation · 1676ca5d
      Chris Jewell authored
      CHANGES:
      
      1. Kernel builder functions moved to `mcmc_kernel_factory.py`
      2. Windowed adaptive MCMC a la STAN implemented in `inference.py`
      3. Prior on beta1 tightened to improve stability.
      4. Depends on `gemlib`@develop branch for tf-nightly and tfp-nightly
      1676ca5d
  2. 24 Feb, 2021 3 commits
  3. 15 Feb, 2021 2 commits
  4. 10 Feb, 2021 3 commits
  5. 09 Feb, 2021 1 commit
  6. 08 Feb, 2021 2 commits
  7. 07 Feb, 2021 1 commit
  8. 02 Feb, 2021 2 commits
  9. 25 Jan, 2021 1 commit
  10. 11 Jan, 2021 2 commits
  11. 10 Jan, 2021 2 commits
    • Chris Jewell's avatar
      Addition of insample posterior check plots · 80bbe105
      Chris Jewell authored
      80bbe105
    • Chris Jewell's avatar
      Pipeline bugfixes · 9fe819d7
      Chris Jewell authored
      CHANGES:
      
      1. Replaced `read_phe_cases` with `CasesData`
      2. Column-name fix in `case_exceedance`
      3. Fix column heading in `summarize.infec_incidence`
      4. Add Rt_exceed to `summarize.rt`
      5. Add layer option to `summary_geopackage`
      6. Update `ruffus_pipeline.py` to reflect above changes
      7. Update `template_config.yaml` to reflect above changes
      9fe819d7
  12. 08 Jan, 2021 1 commit
  13. 07 Jan, 2021 2 commits
  14. 06 Jan, 2021 2 commits