CHANGES:

1. Kernel builder functions moved to `mcmc_kernel_factory.py`
2. Windowed adaptive MCMC a la STAN implemented in `inference.py`
3. Prior on beta1 tightened to improve stability.
4. Depends on `gemlib`@develop branch for tf-nightly and tfp-nightly

Weekly 100k

See merge request !26

Switched to NetCDF4 storage of predictive output

See merge request !25

Chris Jewell authored Feb 24, 2021 and Chris Jewell committed Feb 24, 2021

Changes:

1. Where xarrays were pickled to disc, we now use xarray.to_netcdf
2. Where xarrays were read from Python pickles, we now use xarray.load_dataset


(cherry picked from commit 63519eb3)

Fixed incorrect events dimension

See merge request !22

Created lower bound for posterior events chunk size

See merge request !21

Add missing 21 day incidence and prevalence summary.

See merge request !20

Added mean summary longformat

See merge request !19

Make data summaries weekly

See merge request !18

CHANGES:

1. Introduced default unit traffic flow;
2. Removed old test data from data directory.  This now contains real static data only.
3. Brought README.md up to date.
4. Removed extraneous files from root project directory.