1. 19 Nov, 2020 1 commit
    • Chris Jewell's avatar
      Implemented weekday effect for I->R · 107186d1
      Chris Jewell authored
      CHANGES:
      
      1. Implemented log-linear model for weekday effect in I->R hazard;
      2. Updated summary.py and within_between.py to match;
      3. Implemented linear random walk for new gamma0 parameter.
      4. Implemented per-parameter data structure in output HDF5 file.
      107186d1
  2. 12 Nov, 2020 1 commit
  3. 09 Nov, 2020 1 commit
  4. 03 Nov, 2020 1 commit
  5. 02 Nov, 2020 1 commit
  6. 01 Nov, 2020 1 commit
  7. 27 Oct, 2020 3 commits
    • Chris Jewell's avatar
      Bug fixes · 18e24dc1
      Chris Jewell authored
      CHANGES:
      
      1. Updated the model to use the new gemlib library;
      2. Removed automatic deletion of results directory by prepare_config.py;
      3. Parameterised `gamma` prior parameters and added to template_config.yaml;
      4. Updated within_between.py to use global configuration file.
      18e24dc1
    • Chris Jewell's avatar
      Updated model spec · b095e844
      Chris Jewell authored
      b095e844
    • Chris Jewell's avatar
      Adjusted for new hierarchical model · d23152c1
      Chris Jewell authored
      d23152c1
  8. 26 Oct, 2020 1 commit
  9. 22 Oct, 2020 3 commits
  10. 03 Oct, 2020 1 commit
  11. 01 Oct, 2020 2 commits
  12. 27 Sep, 2020 2 commits
  13. 25 Sep, 2020 1 commit
    • Chris Jewell's avatar
      Refactored model specification · e52283b6
      Chris Jewell authored
      Changes:
      
      1. Created a TFP JointDistribution to represent full probability model;
      2. Renamed CovidUKStochastic --> DiscreteTimeStateTransitionModel;
      3. DiscreteTimeStateTransitionModel now inherits from tfp.Distribution.
      e52283b6