1. 26 Apr, 2021 4 commits
  2. 24 Apr, 2021 3 commits
  3. 23 Apr, 2021 8 commits
  4. 21 Apr, 2021 1 commit
  5. 20 Apr, 2021 2 commits
  6. 15 Apr, 2021 1 commit
  7. 14 Apr, 2021 2 commits
  8. 11 Apr, 2021 2 commits
  9. 30 Mar, 2021 2 commits
  10. 25 Mar, 2021 1 commit
  11. 24 Mar, 2021 5 commits
  12. 21 Mar, 2021 1 commit
  13. 20 Mar, 2021 1 commit
  14. 19 Mar, 2021 1 commit
  15. 18 Mar, 2021 1 commit
    • Chris Jewell's avatar
      Add push to AWS S3 option · 16bad2b7
      Chris Jewell authored
      CHANGES:
      
      1. Add option to upload results to AWS S3 bucket
      2. Remove generation of insample plots from pipeline
      16bad2b7
  16. 17 Mar, 2021 3 commits
  17. 16 Mar, 2021 2 commits
    • Chris Jewell's avatar
      Add time axis to Rt · 215a0ee0
      Chris Jewell authored
      CHANGES:
      
      1. The posterior NGM is now not saved, only the sum over all destinations to give $R_{it}$
      2. Replace Rt as the dominant eigenvalue of the NGM with weighted average by population size.
      3. ngm.nc now contains both $R_{it}$ and $R_t$ posterior predictive values.
      215a0ee0
    • Chris Jewell's avatar
      Bugfix to naming in thin_samples.pkl · 264cea5c
      Chris Jewell authored
      CHANGES:
      
      1. `thin_samples['init_state']` --> `thin_samples['initial_state']`
      2. `thin_samples['events']` --> `thin_samples['seir']`
      3. add time dimension to next generation matrix
      4. update downstream scripts to changes.
      264cea5c