Commit 5d267412 authored by Chris Jewell's avatar Chris Jewell
Browse files

Switched to `argparse` library from deprecated `optparse`

parent a57e2519
"""MCMC Test Rig for COVID-19 UK model"""
import optparse
import argparse
import os
from time import perf_counter
......@@ -36,18 +36,14 @@ DTYPE = config.floatX
if __name__ == "__main__":
# Read in settings
parser = optparse.OptionParser()
help="configuration file",
parser = argparse.ArgumentParser()
"-c", "--config", default="example_config.yaml", help="configuration file",
options, cmd_args = parser.parse_args()
print("Loading config file:", options.config)
args = parser.parse_args()
print("Loading config file:", args.config)
with open(options.config, "r") as f:
with open(args.config, "r") as f:
config = yaml.load(f, Loader=yaml.FullLoader)
covar_data = model_spec.read_covariates(config["data"])
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