ode_config.yaml 573 Bytes
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# Covid_ODE model configuration

data:
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  age_mixing_matrix_term: data/polymod_normal_df.rds
  age_mixing_matrix_hol: data/polymod_no_school_df.rds
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  mobility_matrix: data/movement.rds
  population_size: data/pop.rds
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  reported_cases: data/DailyConfirmedCases.csv
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parameter:
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  epsilon: 1.0e-6
  beta1: 0.04  # R0 2.4
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  beta2: 0.33  # Contact with commuters 1/3rd of the time
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  nu: 0.25
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  gamma: 0.25
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settings:
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  start: 2020-02-04
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  end: 2020-04-01
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  holiday:
    - 2020-04-06
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    - 2020-04-17
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  bg_max_time: 2020-03-01
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  time_step: 1.

output:
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  simulation: covid_ode.hd5