example_config.yaml 613 Bytes
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# Covid_ODE model configuration

data:
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  mobility_matrix: data/example_mobility.csv
  population_size: data/example_population.csv
  commute_volume: data/example_traffic_flow.csv
  reported_cases: data/example_cases.csv
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parameter:
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  beta1: 0.6    # R0 2.4
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  beta2: 0.5   # Contact with commuters 1/3rd of the time
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  beta3: 1.0    # lockdown vs normal
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  nu: 0.5      # E -> I transition rate
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  gamma: 0.25   # I -> R transition rate
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mcmc:
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  dmax: 21
  nmax: 50
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  m: 1
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  occult_nmax: 15
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  num_event_time_updates: 5
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  num_bursts: 10
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  num_burst_samples: 100
  thin: 1
  
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output:
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  posterior: example_posterior.h5