template_config.yaml 1.14 KB
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# Covid stochastic model configuration

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ProcessData:
  date_range:
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    - 2020-10-09
    - 2021-01-01
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  mobility_matrix: data/mergedflows.csv
  population_size: data/c2019modagepop.csv
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  commute_volume: data/201231_OFF_SEN_COVID19_road_traffic_national_table.xlsx
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  CasesData:
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    input: url
    address: https://api.coronavirus.data.gov.uk/v2/data?areaType=ltla&metric=newCasesBySpecimenDate&format=json
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    pillars:
      - Pillar 1
      - Pillar 2
    measure: specimen
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    format: json
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  AreaCodeData:
    input: json
    address:  "https://services1.arcgis.com/ESMARspQHYMw9BZ9/arcgis/rest/services/LAD_APR_2019_UK_NC/FeatureServer/0/query?where=1%3D1&outFields=LAD19CD,LAD19NM&returnGeometry=false&returnDistinctValues=true&orderByFields=LAD19CD&outSR=4326&f=json"
    format: ons
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    regions: ["S"]
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  TierData:
    input: api
    address: None # Rip from gov.uk
    format: api
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Mcmc:
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  dmax: 84
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  nmax: 50
  m: 1
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  occult_nmax: 15
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  num_event_time_updates: 35
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  num_bursts: 200
  num_burst_samples: 50
  thin: 20

ThinPosterior:
  start: 6000
  end: 10000
  by: 10
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Geopackage:
  base_geopackage: data/UK2019mod_pop.gpkg
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  base_layer: UK2019mod_pop_xgen