- 27 Mar, 2022 2 commits
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Chris Jewell authored
Hotfix for new pandas version See merge request !10
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Chris Jewell authored
In previous pandas versions, ```python df = read.csv("/path/to/file.csv") foo = pd.Dataframe(df['bar'], index=df['baz']) ``` would result in `foo`'s index being named `baz`. In pandas==1.1.3 (on which `covid19uk` depends), the column name is *not* used as the index name, resulting in an un-named index. Thus, the index now needs to be explicitly constructed ```python foo = pd.DataFrame(df['bar'], index=pd.Index(df['baz'], name='baz')) ``` to get a named index. CHANGES: 1. Explicit index naming in summarize.py, summary_dha.py.
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- 25 Mar, 2022 3 commits
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Chris Jewell authored
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Chris Jewell authored
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Chris Jewell authored
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- 07 Feb, 2022 2 commits
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Chris Jewell authored
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Chris Jewell authored
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- 11 Jan, 2022 3 commits
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Chris Jewell authored
Update summary_dha.py - colour intervals updated See merge request !8
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Alison Hale authored
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Chris Jewell authored
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- 05 Jan, 2022 1 commit
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Chris Jewell authored
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- 27 Oct, 2021 2 commits
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Chris Jewell authored
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Chris Jewell authored
Merge change to configDHA into add-dha-history
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- 25 Oct, 2021 1 commit
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Chris Jewell authored
Update summary_dha.py: adjust colour scales as number of cases has increased... See merge request !7
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- 22 Oct, 2021 1 commit
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Alison Hale authored
Update summary_dha.py: adjust colour scales as number of cases has increased so much - 'colgrades_Ints' is edited for incidence (abs and 100k), prevalence/100k and cumulative incidence.
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- 23 Aug, 2021 2 commits
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Chris Jewell authored
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Chris Jewell authored
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- 06 Aug, 2021 1 commit
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Chris Jewell authored
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- 03 Aug, 2021 1 commit
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Chris Jewell authored
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- 28 Jul, 2021 1 commit
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Chris Jewell authored
CHANGES: 1. Lancaster CC risk report integrated into pipeline; 2. DSTL Scotland estimates adaptor code incorporated; 3. Update to covid19uk v0.8.0-alpha.5
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- 29 Jun, 2021 2 commits
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Chris Jewell authored
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Chris Jewell authored
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- 28 Jun, 2021 3 commits
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Chris Jewell authored
New features ============= 1. Update to `covid19uk` version 0.8.0-alpha.4 2. Add Dynamic Health Atlas output to pipeline.
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Chris Jewell authored
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Alison Hale authored
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- 25 Jun, 2021 1 commit
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Alison Hale authored
Update summary_dha.py to include new url argument which needs to be included when calling summary_dha(input_files, output_folder, num_weeks, ci_list, config, url=""). To map to minio baysstm use url="https://fhm-chicas-storage.lancs.ac.uk/bayesstm/latest/"
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- 23 Jun, 2021 1 commit
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Alison Hale authored
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- 21 Jun, 2021 5 commits
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Alison Hale authored
Updates: a) added package pathlib; b) parameter "output_folders" replaced by new parameter "output_folder"; c) makes folders "data" and "js" in "output_folder" if they don't exist.
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Chris Jewell authored
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Chris Jewell authored
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Chris Jewell authored
CHANGES: 1. Added missing argument to `insample_write_json` 2. Reformatted code a la PEP
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Alison Hale authored
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- 16 Jun, 2021 2 commits
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Chris Jewell authored
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Chris Jewell authored
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- 09 Jun, 2021 3 commits
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Chris Jewell authored
This reverts commit 9e6bb98f
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Chris Jewell authored
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Chris Jewell authored
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- 01 Jun, 2021 2 commits
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Chris Jewell authored
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Chris Jewell authored
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- 25 May, 2021 1 commit
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Chris Jewell authored
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