Commit 77d9aca4 authored by Chris Jewell's avatar Chris Jewell
Browse files

Minor changes for NetCDF4 files, dependencies, queue type

parent b0093558
......@@ -174,11 +174,11 @@ if __name__ == "__main__":
input_files = [
os.path.join(args.resultsdir, d)
for d in [
"pipeline_data.pkl",
"inferencedata.nc",
"insample7.nc",
"insample14.nc",
"medium_term.nc",
"ngm.nc",
"reproduction_number.nc",
]
]
......
......@@ -12,11 +12,11 @@
#$ -S /bin/bash
#$ -P chicas
#$ -q short
#$ -q medium
#$ -l ngpus=1
#$ -l ncpus=4
#$ -l h_vmem=64G
#$ -l h_rt=10:00:00
#$ -l h_rt=20:00:00
#$ -j y
#$ -cwd
#$ -M c.jewell@lancaster.ac.uk
......
......@@ -17,6 +17,8 @@ enum34 = "1.1.8"
mapclassify = "^2.4.2"
dhaconfig = {git = "https://gitlab.com/achale/dhaconfig.git", tag="v0.0.2"}
covid19uk = {git = "https://gitlab.com/chicas-covid19/covid19uk.git", tag="v0.8.0-alpha.5"}
nodejs = "^0.1.1"
npm = "^0.1.1"
[tool.poetry.dev-dependencies]
jedi = "^0.17.2"
......
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