Commit 1c2a6240 authored by Chris Jewell's avatar Chris Jewell
Browse files

Removed prediction of incidence and prevalence from CrystalCast output

parent 0a665e9c
......@@ -114,10 +114,10 @@ def summarize_supergeography(event_samples, rt, population, geography_name):
"""
# Incidence
incidence_xarr = incidence(event_samples, population)
# incidence_xarr = incidence(event_samples, population)
# Prevalence
prev_xarr = prevalence(event_samples, population)
# prev_xarr = prevalence(event_samples, population)
# Rt
rt_summary = (rt["R_it"] * population / population.sum()).sum(
......@@ -126,8 +126,8 @@ def summarize_supergeography(event_samples, rt, population, geography_name):
df = pd.concat(
[
_xarray2dstl(incidence_xarr, "incidence", geography_name),
_xarray2dstl(prev_xarr, "prevalence", geography_name),
# _xarray2dstl(incidence_xarr, "incidence", geography_name),
# _xarray2dstl(prev_xarr, "prevalence", geography_name),
_xarray2dstl(rt_summary, "R", geography_name),
],
axis=0,
......
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