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Note on DataOps for CHICAS
Repository containing the Covid19UK pipeline
Making Uber H3 hexagons for polygon areas, with sample UK data.
Grabs ISO8601 date-named folders from an SFTP server.
Discrete time Markov epidemic model for COVID-19. This paper describes the MCMC sampler we use to impute censored event times.
Sequential testing study for COVID-19
sourceR R package to fit source attribution models
Code for clustering of binary symptom data.
Pseudomarginal inference on SIR and SIS models, motivated by Rebecca Lester's community study...hence the package name.