GitLab

Note on DataOps for CHICAS

Repository containing the Covid19UK pipeline

Making Uber H3 hexagons for polygon areas, with sample UK data.

Grabs ISO8601 date-named folders from an SFTP server.

Discrete time Markov epidemic model for COVID-19. This paper describes the MCMC sampler we use to impute censored event times.

Sequential testing study for COVID-19

sourceR R package to fit source attribution models

Code for clustering of binary symptom data.

Pseudomarginal inference on SIR and SIS models, motivated by Rebecca Lester's community study...hence the package name.