Explore projects
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Scripts for reproducing the results in our paper on high-dimensional prediction over subgroups.
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This project contains the Python code for the PhD thesis titled "Joint epidemic and spatio-temporal approach for modelling disease outbreaks" at Lancaster University supervised by Dr. Chris Jewell and Prof. Dr. Peter Neal.
It provides an extension to the Python probabilistic programming library PyMC3 with a sampler to effectively impute missing infection and removal time data. Furthermore, it integrates a mechanistic modeling approach into an epidemiological modeling setting.
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Repository containing the Covid19UK pipeline
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Pseudomarginal inference on SIR and SIS models, motivated by Rebecca Lester's community study...hence the package name.
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