This is the repository for the main InFER (Inference for Epidemic Risk) package.
R package to read InFER HDF5-format MCMC output files
GPU implementation of a variogram, wrapped as an R package.
A Bayesian ZIP model which uses covariates on both the Poisson and Binomial parts.
sourceR R package to fit source attribution models
Scripts for reproducing the results in our paper on high-dimensional prediction over subgroups.
Notes from a seminar on RHDF5.
Experiments with ZigZag on SIR epidemic models.
An R package implementing a modified Reynolds 1986 flocking algorithm.
Language examples for epidemic modelling language
Inhibitory close pairs design.
Examples of epidemic likelihood functions
The DRUM agent-based model.