Experiments with ZigZag on SIR epidemic models.
A Bayesian ZIP model which uses covariates on both the Poisson and Binomial parts.
Scripts for reproducing the results in our paper on high-dimensional prediction over subgroups.
sourceR R package to fit source attribution models
Sequential testing study for COVID-19
Notes from a seminar on RHDF5.
Network epidemic package.
R package to read InFER HDF5-format MCMC output files
This is the repository for the main InFER (Inference for Epidemic Risk) package.
Inhibitory close pairs design.
Making Uber H3 hexagons for polygon areas, with sample UK data.
GPU implementation of a variogram, wrapped as an R package.
An R package implementing a modified Reynolds 1986 flocking algorithm.
Examples of epidemic likelihood functions