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R package to read InFER HDF5-format MCMC output files

Scripts for reproducing the results in our paper on high-dimensional prediction over subgroups.

This is the repository for the main InFER (Inference for Epidemic Risk) package.

A Bayesian ZIP model which uses covariates on both the Poisson and Binomial parts.

BIOL132 Introductory Biostats for 1st year biology students.

Experiments with ZigZag on SIR epidemic models.

GPU implementation of a variogram, wrapped as an R package.

sourceR R package to fit source attribution models

Language examples for epidemic modelling language

An R package implementing a modified Reynolds 1986 flocking algorithm.

Pseudomarginal inference on SIR and SIS models, motivated by Rebecca Lester's community study...hence the package name.

Notes from a seminar on RHDF5.

Inhibitory close pairs design.

GEM epidemic modelling software base -- https://gem.readthedocs.io/en/latest/

Algorithm examples for GEM project