GitLab

This is the repository for the main InFER (Inference for Epidemic Risk) package.

Pseudomarginal inference on SIR and SIS models, motivated by Rebecca Lester's community study...hence the package name.

Network epidemic package.

Experiments with ZigZag on SIR epidemic models.

Inhibitory close pairs design.

Examples of epidemic likelihood functions

Language examples for epidemic modelling language

Algorithm examples for GEM project

An R package implementing a modified Reynolds 1986 flocking algorithm.

Scripts for reproducing the results in our paper on high-dimensional prediction over subgroups.

Notes from a seminar on RHDF5.

A Bayesian ZIP model which uses covariates on both the Poisson and Binomial parts.

R package to read InFER HDF5-format MCMC output files