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Examples of epidemic likelihood functions
Network epidemic package.
The DRUM agent-based model.
Code for clustering of binary symptom data.
sourceR R package to fit source attribution models
Grabs ISO8601 date-named folders from an SFTP server.
Making Uber H3 hexagons for polygon areas, with sample UK data.
Sequential testing study for COVID-19
Discrete time Markov epidemic model for COVID-19. This paper describes the MCMC sampler we use to impute censored event times.
Note on DataOps for CHICAS