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Algorithm examples for GEM project

Pseudomarginal inference on SIR and SIS models, motivated by Rebecca Lester's community study...hence the package name.

BIOL132 Introductory Biostats for 1st year biology students.

Repository containing the Covid19UK pipeline

Code for clustering of binary symptom data.

Grabs ISO8601 date-named folders from an SFTP server.

The DRUM agent-based model.

Discrete time Markov epidemic model for COVID-19. This paper describes the MCMC sampler we use to impute censored event times.

Examples of epidemic likelihood functions

An R package implementing a modified Reynolds 1986 flocking algorithm.

GEM epidemic modelling software base -- https://gem.readthedocs.io/en/latest/

Add-on classes for Tensorflow Probability provided by GEM. This is a transitional repo, intended to be incorporated into GEM eventually.

This project has been migrated to https://gitlab.com/gem-epidemics/gemlib