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R package to read InFER HDF5-format MCMC output files

This is the repository for the main InFER (Inference for Epidemic Risk) package.

Inhibitory close pairs design.

Making Uber H3 hexagons for polygon areas, with sample UK data.

GPU implementation of a variogram, wrapped as an R package.

Add-on classes for Tensorflow Probability provided by GEM. This is a transitional repo, intended to be incorporated into GEM eventually.

This project has been migrated to https://gitlab.com/gem-epidemics/gemlib

GEM epidemic modelling software base -- https://gem.readthedocs.io/en/latest/

An R package implementing a modified Reynolds 1986 flocking algorithm.

Examples of epidemic likelihood functions

Discrete time Markov epidemic model for COVID-19. This paper describes the MCMC sampler we use to impute censored event times.

The DRUM agent-based model.