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Code for clustering of binary symptom data.

Sequential testing study for COVID-19

Discrete time Markov epidemic model for COVID-19. This paper describes the MCMC sampler we use to impute censored event times.

Grabs ISO8601 date-named folders from an SFTP server.

Making Uber H3 hexagons for polygon areas, with sample UK data.

sourceR R package to fit source attribution models

The DRUM agent-based model.

GEM epidemic modelling software base -- https://gem.readthedocs.io/en/latest/

Note on DataOps for CHICAS

Add-on classes for Tensorflow Probability provided by GEM. This is a transitional repo, intended to be incorporated into GEM eventually.

This project has been migrated to https://gitlab.com/gem-epidemics/gemlib

sourceR R package to fit source attribution models