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Examples of epidemic likelihood functions

Network epidemic package.

The DRUM agent-based model.

Code for clustering of binary symptom data.

sourceR R package to fit source attribution models

Grabs ISO8601 date-named folders from an SFTP server.

Sequential testing study for COVID-19

Discrete time Markov epidemic model for COVID-19. This paper describes the MCMC sampler we use to impute censored event times.

Note on DataOps for CHICAS

Add-on classes for Tensorflow Probability provided by GEM. This is a transitional repo, intended to be incorporated into GEM eventually.

This project has been migrated to https://gitlab.com/gem-epidemics/gemlib