Examples of epidemic likelihood functions
Network epidemic package.
The DRUM agent-based model.
Code for clustering of binary symptom data.
sourceR R package to fit source attribution models
Grabs ISO8601 date-named folders from an SFTP server.
Sequential testing study for COVID-19
Discrete time Markov epidemic model for COVID-19. This paper describes the MCMC sampler we use to impute censored event times.
Note on DataOps for CHICAS
Add-on classes for Tensorflow Probability provided by GEM. This is a transitional repo, intended to be incorporated into GEM eventually.
This project has been migrated to https://gitlab.com/gem-epidemics/gemlib