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sourceR R package to fit source attribution models

Code for clustering of binary symptom data.

Pseudomarginal inference on SIR and SIS models, motivated by Rebecca Lester's community study...hence the package name.

Network epidemic package.

Inhibitory close pairs design.

Examples of epidemic likelihood functions

The DRUM agent-based model.

Algorithm examples for GEM project

Language examples for epidemic modelling language

An R package implementing a modified Reynolds 1986 flocking algorithm.

GEM epidemic modelling software base -- https://gem.readthedocs.io/en/latest/

Experiments with ZigZag on SIR epidemic models.