Inhibitory close pairs design.
Network epidemic package.
Pseudomarginal inference on SIR and SIS models, motivated by Rebecca Lester's community study...hence the package name.
Code for clustering of binary symptom data.
sourceR R package to fit source attribution models
Sequential testing study for COVID-19
Discrete time Markov epidemic model for COVID-19. This paper describes the MCMC sampler we use to impute censored event times.
Grabs ISO8601 date-named folders from an SFTP server.
Add-on classes for Tensorflow Probability provided by GEM. This is a transitional repo, intended to be incorporated into GEM eventually.
This project has been migrated to https://gitlab.com/gem-epidemics/gemlib
Making Uber H3 hexagons for polygon areas, with sample UK data.