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sourceR R package to fit source attribution models

Making Uber H3 hexagons for polygon areas, with sample UK data.

Grabs ISO8601 date-named folders from an SFTP server.

Discrete time Markov epidemic model for COVID-19. This paper describes the MCMC sampler we use to impute censored event times.

Sequential testing study for COVID-19

Code for clustering of binary symptom data.

Pseudomarginal inference on SIR and SIS models, motivated by Rebecca Lester's community study...hence the package name.

Network epidemic package.

Experiments with ZigZag on SIR epidemic models.

Inhibitory close pairs design.

Examples of epidemic likelihood functions

Language examples for epidemic modelling language