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sourceR R package to fit source attribution models

GPU implementation of a variogram, wrapped as an R package.

Experiments with ZigZag on SIR epidemic models.

The DRUM agent-based model.

BIOL132 Introductory Biostats for 1st year biology students.

This is the repository for the main InFER (Inference for Epidemic Risk) package.

A Bayesian ZIP model which uses covariates on both the Poisson and Binomial parts.

GEM epidemic modelling software base -- https://gem.readthedocs.io/en/latest/

Network epidemic package.

Algorithm examples for GEM project

Repository containing the Covid19UK pipeline

Pseudomarginal inference on SIR and SIS models, motivated by Rebecca Lester's community study...hence the package name.

Discrete time Markov epidemic model for COVID-19. This paper describes the MCMC sampler we use to impute censored event times.

Code for clustering of binary symptom data.

R package to read InFER HDF5-format MCMC output files

Scripts for reproducing the results in our paper on high-dimensional prediction over subgroups.